Print a <hub_connection> or <mod_out_connection> S3 class object
Source: R/print.R
print.hub_connection.RdPrint a <hub_connection> or <mod_out_connection> S3 class object
Functions
print(hub_connection): print a<hub_connection>object.print(mod_out_connection): print a<mod_out_connection>object.
Examples
hub_path <- system.file("testhubs/simple", package = "hubUtils")
hub_con <- connect_hub(hub_path)
hub_con
#>
#> ── <hub_connection/UnionDataset> ──
#>
#> • hub_name: "Simple Forecast Hub"
#> • hub_path: /home/runner/work/_temp/Library/hubUtils/testhubs/simple
#> • file_format: "csv(3/3)" and "parquet(1/1)"
#> • checks: TRUE
#> • file_system: "LocalFileSystem"
#> • model_output_dir:
#> "/home/runner/work/_temp/Library/hubUtils/testhubs/simple/model-output"
#> • config_admin: hub-config/admin.json
#> • config_tasks: hub-config/tasks.json
#>
#> ── Connection schema
#> hub_connection
#> 9 columns
#> origin_date: date32[day]
#> target: string
#> horizon: int32
#> location: string
#> output_type: string
#> output_type_id: double
#> value: int32
#> model_id: string
#> age_group: string
print(hub_con)
#>
#> ── <hub_connection/UnionDataset> ──
#>
#> • hub_name: "Simple Forecast Hub"
#> • hub_path: /home/runner/work/_temp/Library/hubUtils/testhubs/simple
#> • file_format: "csv(3/3)" and "parquet(1/1)"
#> • checks: TRUE
#> • file_system: "LocalFileSystem"
#> • model_output_dir:
#> "/home/runner/work/_temp/Library/hubUtils/testhubs/simple/model-output"
#> • config_admin: hub-config/admin.json
#> • config_tasks: hub-config/tasks.json
#>
#> ── Connection schema
#> hub_connection
#> 9 columns
#> origin_date: date32[day]
#> target: string
#> horizon: int32
#> location: string
#> output_type: string
#> output_type_id: double
#> value: int32
#> model_id: string
#> age_group: string
print(hub_con, verbose = TRUE)
#>
#> ── <hub_connection/UnionDataset> ──
#>
#> • hub_name: "Simple Forecast Hub"
#> • hub_path: /home/runner/work/_temp/Library/hubUtils/testhubs/simple
#> • file_format: "csv(3/3)" and "parquet(1/1)"
#> • checks: TRUE
#> • file_system: "LocalFileSystem"
#> • model_output_dir:
#> "/home/runner/work/_temp/Library/hubUtils/testhubs/simple/model-output"
#> • config_admin: hub-config/admin.json
#> • config_tasks: hub-config/tasks.json
#>
#> ── Connection schema
#> hub_connection
#> 9 columns
#> origin_date: date32[day]
#> target: string
#> horizon: int32
#> location: string
#> output_type: string
#> output_type_id: double
#> value: int32
#> model_id: string
#> age_group: string
#> Classes 'hub_connection', 'UnionDataset', 'Dataset', 'ArrowObject', 'R6' <hub_connection>
#> Inherits from: <UnionDataset>
#> Public:
#> .:xp:.: externalptr
#> .unsafe_delete: function ()
#> NewScan: function ()
#> ToString: function ()
#> WithSchema: function (schema)
#> children: active binding
#> class_title: function ()
#> clone: function (deep = FALSE)
#> initialize: function (xp)
#> metadata: active binding
#> num_cols: active binding
#> num_rows: active binding
#> pointer: function ()
#> print: function (...)
#> schema: active binding
#> set_pointer: function (xp)
#> type: active binding
#> - attr(*, "hub_name")= chr "Simple Forecast Hub"
#> - attr(*, "file_format")= int [1:2, 1:2] 3 3 1 1
#> ..- attr(*, "dimnames")=List of 2
#> .. ..$ : chr [1:2] "n_open" "n_in_dir"
#> .. ..$ : chr [1:2] "csv" "parquet"
#> - attr(*, "checks")= logi TRUE
#> - attr(*, "file_system")= chr "LocalFileSystem"
#> - attr(*, "hub_path")= chr "/home/runner/work/_temp/Library/hubUtils/testhubs/simple"
#> - attr(*, "model_output_dir")= chr "/home/runner/work/_temp/Library/hubUtils/testhubs/simple/model-output"
#> - attr(*, "config_admin")=List of 8
#> ..$ schema_version: chr "https://raw.githubusercontent.com/hubverse-org/schemas/main/v2.0.0/admin-schema.json"
#> ..$ name : chr "Simple Forecast Hub"
#> ..$ maintainer : chr "Consortium of Infectious Disease Modeling Hubs"
#> ..$ contact :List of 2
#> .. ..$ name : chr "Joe Bloggs"
#> .. ..$ email: chr "j.bloggs@cidmh.com"
#> ..$ repository_url: chr "https://github.com/hubverse-org/example-simple-forecast-hub"
#> ..$ hub_models :List of 1
#> .. ..$ :List of 3
#> .. .. ..$ team_abbr : chr "simple_hub"
#> .. .. ..$ model_abbr: chr "baseline"
#> .. .. ..$ model_type: chr "baseline"
#> ..$ file_format : chr [1:3] "csv" "parquet" "arrow"
#> ..$ timezone : chr "US/Eastern"
#> ..- attr(*, "schema_id")= chr "https://raw.githubusercontent.com/hubverse-org/schemas/main/v2.0.0/admin-schema.json"
#> ..- attr(*, "type")= chr "admin"
#> ..- attr(*, "class")= chr [1:2] "config" "list"
#> - attr(*, "config_tasks")=List of 2
#> ..$ schema_version: chr "https://raw.githubusercontent.com/hubverse-org/schemas/main/v2.0.0/tasks-schema.json"
#> ..$ rounds :List of 2
#> .. ..$ :List of 4
#> .. .. ..$ round_id_from_variable: logi TRUE
#> .. .. ..$ round_id : chr "origin_date"
#> .. .. ..$ model_tasks :List of 1
#> .. .. .. ..$ :List of 3
#> .. .. .. .. ..$ task_ids :List of 4
#> .. .. .. .. .. ..$ origin_date:List of 2
#> .. .. .. .. .. .. ..$ required: NULL
#> .. .. .. .. .. .. ..$ optional: chr [1:2] "2022-10-01" "2022-10-08"
#> .. .. .. .. .. ..$ target :List of 2
#> .. .. .. .. .. .. ..$ required: chr "wk inc flu hosp"
#> .. .. .. .. .. .. ..$ optional: NULL
#> .. .. .. .. .. ..$ horizon :List of 2
#> .. .. .. .. .. .. ..$ required: int 1
#> .. .. .. .. .. .. ..$ optional: int [1:3] 2 3 4
#> .. .. .. .. .. ..$ location :List of 2
#> .. .. .. .. .. .. ..$ required: NULL
#> .. .. .. .. .. .. ..$ optional: chr [1:54] "US" "01" "02" "04" ...
#> .. .. .. .. ..$ output_type :List of 2
#> .. .. .. .. .. ..$ mean :List of 2
#> .. .. .. .. .. .. ..$ output_type_id:List of 2
#> .. .. .. .. .. .. .. ..$ required: NULL
#> .. .. .. .. .. .. .. ..$ optional: logi NA
#> .. .. .. .. .. .. ..$ value :List of 2
#> .. .. .. .. .. .. .. ..$ type : chr "integer"
#> .. .. .. .. .. .. .. ..$ minimum: int 0
#> .. .. .. .. .. ..$ quantile:List of 2
#> .. .. .. .. .. .. ..$ output_type_id:List of 2
#> .. .. .. .. .. .. .. ..$ required: num [1:23] 0.01 0.025 0.05 0.1 0.15 0.2 0.25 0.3 0.35 0.4 ...
#> .. .. .. .. .. .. .. ..$ optional: NULL
#> .. .. .. .. .. .. ..$ value :List of 2
#> .. .. .. .. .. .. .. ..$ type : chr "integer"
#> .. .. .. .. .. .. .. ..$ minimum: int 0
#> .. .. .. .. ..$ target_metadata:List of 1
#> .. .. .. .. .. ..$ :List of 7
#> .. .. .. .. .. .. ..$ target_id : chr "wk inc flu hosp"
#> .. .. .. .. .. .. ..$ target_name : chr "Weekly incident influenza hospitalizations"
#> .. .. .. .. .. .. ..$ target_units : chr "count"
#> .. .. .. .. .. .. ..$ target_keys :List of 1
#> .. .. .. .. .. .. .. ..$ target: chr "wk inc flu hosp"
#> .. .. .. .. .. .. ..$ target_type : chr "continuous"
#> .. .. .. .. .. .. ..$ is_step_ahead: logi TRUE
#> .. .. .. .. .. .. ..$ time_unit : chr "week"
#> .. .. ..$ submissions_due :List of 3
#> .. .. .. ..$ relative_to: chr "origin_date"
#> .. .. .. ..$ start : int -6
#> .. .. .. ..$ end : int 1
#> .. ..$ :List of 4
#> .. .. ..$ round_id_from_variable: logi TRUE
#> .. .. ..$ round_id : chr "origin_date"
#> .. .. ..$ model_tasks :List of 1
#> .. .. .. ..$ :List of 3
#> .. .. .. .. ..$ task_ids :List of 5
#> .. .. .. .. .. ..$ origin_date:List of 2
#> .. .. .. .. .. .. ..$ required: NULL
#> .. .. .. .. .. .. ..$ optional: chr [1:3] "2022-10-15" "2022-10-22" "2022-10-29"
#> .. .. .. .. .. ..$ target :List of 2
#> .. .. .. .. .. .. ..$ required: chr "wk inc flu hosp"
#> .. .. .. .. .. .. ..$ optional: NULL
#> .. .. .. .. .. ..$ horizon :List of 2
#> .. .. .. .. .. .. ..$ required: int 1
#> .. .. .. .. .. .. ..$ optional: int [1:3] 2 3 4
#> .. .. .. .. .. ..$ location :List of 2
#> .. .. .. .. .. .. ..$ required: NULL
#> .. .. .. .. .. .. ..$ optional: chr [1:54] "US" "01" "02" "04" ...
#> .. .. .. .. .. ..$ age_group :List of 2
#> .. .. .. .. .. .. ..$ required: chr "65+"
#> .. .. .. .. .. .. ..$ optional: chr [1:4] "0-5" "6-18" "19-24" "25-64"
#> .. .. .. .. ..$ output_type :List of 2
#> .. .. .. .. .. ..$ mean :List of 2
#> .. .. .. .. .. .. ..$ output_type_id:List of 2
#> .. .. .. .. .. .. .. ..$ required: NULL
#> .. .. .. .. .. .. .. ..$ optional: logi NA
#> .. .. .. .. .. .. ..$ value :List of 2
#> .. .. .. .. .. .. .. ..$ type : chr "integer"
#> .. .. .. .. .. .. .. ..$ minimum: int 0
#> .. .. .. .. .. ..$ quantile:List of 2
#> .. .. .. .. .. .. ..$ output_type_id:List of 2
#> .. .. .. .. .. .. .. ..$ required: num [1:23] 0.01 0.025 0.05 0.1 0.15 0.2 0.25 0.3 0.35 0.4 ...
#> .. .. .. .. .. .. .. ..$ optional: NULL
#> .. .. .. .. .. .. ..$ value :List of 2
#> .. .. .. .. .. .. .. ..$ type : chr "integer"
#> .. .. .. .. .. .. .. ..$ minimum: int 0
#> .. .. .. .. ..$ target_metadata:List of 1
#> .. .. .. .. .. ..$ :List of 7
#> .. .. .. .. .. .. ..$ target_id : chr "wk inc flu hosp"
#> .. .. .. .. .. .. ..$ target_name : chr "Weekly incident influenza hospitalizations"
#> .. .. .. .. .. .. ..$ target_units : chr "count"
#> .. .. .. .. .. .. ..$ target_keys :List of 1
#> .. .. .. .. .. .. .. ..$ target: chr "wk inc flu hosp"
#> .. .. .. .. .. .. ..$ target_type : chr "continuous"
#> .. .. .. .. .. .. ..$ is_step_ahead: logi TRUE
#> .. .. .. .. .. .. ..$ time_unit : chr "week"
#> .. .. ..$ submissions_due :List of 3
#> .. .. .. ..$ relative_to: chr "origin_date"
#> .. .. .. ..$ start : int -6
#> .. .. .. ..$ end : int 1
#> ..- attr(*, "schema_id")= chr "https://raw.githubusercontent.com/hubverse-org/schemas/main/v2.0.0/tasks-schema.json"
#> ..- attr(*, "type")= chr "tasks"
#> ..- attr(*, "class")= chr [1:2] "config" "list"
mod_out_path <- system.file("testhubs/simple/model-output", package = "hubUtils")
mod_out_con <- connect_model_output(mod_out_path)
print(mod_out_con)
#>
#> ── <mod_out_connection/FileSystemDataset> ──
#>
#> • file_format: "csv(3/3)"
#> • checks: TRUE
#> • file_system: "LocalFileSystem"
#> • model_output_dir:
#> "/home/runner/work/_temp/Library/hubUtils/testhubs/simple/model-output"
#>
#> ── Connection schema
#> mod_out_connection with 3 csv files
#> 8 columns
#> origin_date: date32[day]
#> target: string
#> horizon: int64
#> location: string
#> output_type: string
#> output_type_id: double
#> value: int64
#> model_id: string