Create an object of class round — create

Create a representation of a round item as a list object of class round. This can be combined with additional round objects using function create_rounds(). Such building blocks can ultimately be combined and then written out as or appended to tasks.json Hub config files.

Usage

create_round(
  round_id_from_variable,
  round_id,
  round_name = NULL,
  model_tasks,
  submissions_due,
  last_data_date = NULL,
  file_format = NULL,
  derived_task_ids = NULL
)

Arguments

round_id_from_variable

logical. Whether round_id is inferred from the values of a task_id variable within the model_tasks model_task items.

round_id

character string. The round identifier. If round_id_from_variable = TRUE, round_id should be the name of a task_id variable present in all model_tasks model_task items.

round_name

character string. An optional round name. This can be useful for internal referencing of rounds, for examples, when a date is used as round_id but hub maintainers and teams also refer to rounds as round-1, round-2 etc.

model_tasks

an object of class model_tasks created with function create_model_tasks().

submissions_due

named list conforming to one of the two following structures:

Submission dates for round is determined relative to an origin date.
- relative_to: character string of the name of the task_id variable containing origin dates in relation to which submission start and end dates are determined.
- start: integer. Difference in days between start and origin date.
- end: integer. Difference in days between end and origin date.
Submission dates for round are provided explicitly.
- start: character. Submission start date in ISO 8601 format (YYYY-MM-DD).
- end: character. Submission end date in ISO 8601 format (YYYY-MM-DD).

last_data_date

character date in ISO 8601 format (YYYY-MM-DD). The last date with recorded data in the data set used as input to a model. Optional.

file_format

character string. An optional specification of a file format for the round. This option in only available for some versions of the schema and is ignored if not allowed in the version of the schema used. It also overrides any specification of file format in admin.json. For more details on whether this argument can be used as well as available formats, please consult the documentation on tasks.json Hub config files.

derived_task_ids

character vector of derived task id names (i.e. task IDs whose values are depended on the values of other task IDs). Only available for schema version v4.0.0 and later.

Value

a named list of class round.

Details

For more details consult the documentation on tasks.json Hub config files.

Examples

model_tasks <- create_model_tasks(
  create_model_task(
    task_ids = create_task_ids(
      create_task_id("origin_date",
        required = NULL,
        optional = c(
          "2023-01-02",
          "2023-01-09",
          "2023-01-16"
        )
      ),
      create_task_id("location",
        required = "US",
        optional = c("01", "02", "04", "05", "06")
      ),
      create_task_id("horizon",
        required = 1L,
        optional = 2:4
      )
    ),
    output_type = create_output_type(
      create_output_type_mean(
        is_required = TRUE,
        value_type = "double",
        value_minimum = 0L
      )
    ),
    target_metadata = create_target_metadata(
      create_target_metadata_item(
        target_id = "inc hosp",
        target_name = "Weekly incident influenza hospitalizations",
        target_units = "rate per 100,000 population",
        target_keys = NULL,
        target_type = "discrete",
        is_step_ahead = TRUE,
        time_unit = "week"
      )
    )
  )
)
create_round(
  round_id_from_variable = TRUE,
  round_id = "origin_date",
  model_tasks = model_tasks,
  submissions_due = list(
    relative_to = "origin_date",
    start = -4L,
    end = 2L
  ),
  last_data_date = "2023-01-02"
)
#> $round_id_from_variable
#> [1] TRUE
#> 
#> $round_id
#> [1] "origin_date"
#> 
#> $model_tasks
#> $model_tasks[[1]]
#> $model_tasks[[1]]$task_ids
#> $model_tasks[[1]]$task_ids$origin_date
#> $model_tasks[[1]]$task_ids$origin_date$required
#> NULL
#> 
#> $model_tasks[[1]]$task_ids$origin_date$optional
#> [1] "2023-01-02" "2023-01-09" "2023-01-16"
#> 
#> 
#> $model_tasks[[1]]$task_ids$location
#> $model_tasks[[1]]$task_ids$location$required
#> [1] "US"
#> 
#> $model_tasks[[1]]$task_ids$location$optional
#> [1] "01" "02" "04" "05" "06"
#> 
#> 
#> $model_tasks[[1]]$task_ids$horizon
#> $model_tasks[[1]]$task_ids$horizon$required
#> [1] 1
#> 
#> $model_tasks[[1]]$task_ids$horizon$optional
#> [1] 2 3 4
#> 
#> 
#> 
#> $model_tasks[[1]]$output_type
#> $model_tasks[[1]]$output_type$mean
#> $model_tasks[[1]]$output_type$mean$output_type_id
#> $model_tasks[[1]]$output_type$mean$output_type_id$required
#> NULL
#> 
#> 
#> $model_tasks[[1]]$output_type$mean$is_required
#> [1] TRUE
#> 
#> $model_tasks[[1]]$output_type$mean$value
#> $model_tasks[[1]]$output_type$mean$value$type
#> [1] "double"
#> 
#> $model_tasks[[1]]$output_type$mean$value$minimum
#> [1] 0
#> 
#> 
#> 
#> 
#> $model_tasks[[1]]$target_metadata
#> $model_tasks[[1]]$target_metadata[[1]]
#> $model_tasks[[1]]$target_metadata[[1]]$target_id
#> [1] "inc hosp"
#> 
#> $model_tasks[[1]]$target_metadata[[1]]$target_name
#> [1] "Weekly incident influenza hospitalizations"
#> 
#> $model_tasks[[1]]$target_metadata[[1]]$target_units
#> [1] "rate per 100,000 population"
#> 
#> $model_tasks[[1]]$target_metadata[[1]]$target_keys
#> NULL
#> 
#> $model_tasks[[1]]$target_metadata[[1]]$target_type
#> [1] "discrete"
#> 
#> $model_tasks[[1]]$target_metadata[[1]]$is_step_ahead
#> [1] TRUE
#> 
#> $model_tasks[[1]]$target_metadata[[1]]$time_unit
#> [1] "week"
#> 
#> 
#> 
#> 
#> 
#> $submissions_due
#> $submissions_due$relative_to
#> [1] "origin_date"
#> 
#> $submissions_due$start
#> [1] -4
#> 
#> $submissions_due$end
#> [1] 2
#> 
#> 
#> $last_data_date
#> [1] "2023-01-02"
#> 
#> attr(,"class")
#> [1] "round" "list" 
#> attr(,"round_id")
#> [1] "origin_date"
#> attr(,"schema_id")
#> [1] "https://raw.githubusercontent.com/hubverse-org/schemas/main/v4.0.0/tasks-schema.json"
#> attr(,"branch")
#> [1] "main"

Create an object of class `round`

Usage

Arguments

Value

Details

See also

Examples